PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678380290
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 152aa    MW: 16201.4 Da    PI: 10.1308
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678380290genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.9e-26959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien   rqvtfskRr g++KKA EL vLCda+va+iifs tgklye++s
  678380290  9 KKIENVNSRQVTFSKRRGGLIKKARELAVLCDAQVALIIFSGTGKLYEFAS 59
               68***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.567161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-29272IPR002100Transcription factor, MADS-box
CDDcd002652.09E-37265No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-293859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGRGKIEIKK IENVNSRQVT FSKRRGGLIK KARELAVLCD AQVALIIFSG TGKLYEFASS  60
WIKSINTENL FISGTGKEGD AAKRSAYGEE ELRRFASLGD GSGLVARKDA YLCESDGVSD  120
TSLRLGISPV DSGRSAGKKP AASGRDKGGL LD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19160160MEF2C
5f28_B2e-19160160MEF2C
5f28_C2e-19160160MEF2C
5f28_D2e-19160160MEF2C
Cis-element ? help Back to Top
SourceLink
PlantRegMap678380290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-31AGAMOUS-like 18