PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678381499
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 325aa    MW: 36648.6 Da    PI: 7.7503
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678381499genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.65e-0987111126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ykt+lC  f+  GtC+ G+ C+FaHg
  678381499  87 YKTRLCTQFRD-GTCRNGEHCTFAHG 111
                9******7777.*************8 PP
2zf-CCCH253.3e-08147170225
                -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                ++++C+ ++ + +C+yGd+C+F+H
  678381499 147 RMKICNKYYSGEECPYGDKCNFIH 170
                5789******66************ PP
3zf-CCCH39.87.3e-13213238127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt++C+ +   G+C+yGdrC+FaHg+
  678381499 213 WKTKICSKWEM-GICPYGDRCSFAHGQ 238
                8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.49E-884117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.96286113IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-486112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-1486119IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-787111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-7145172IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4145172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455145173IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-6147170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-8148171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-9210242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-16210242IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7212238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.253212239IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10213238IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSYPDPQPLL HGQRFMPSPF SVGDEGNFWQ PLPAEKPQNL GRQFDHPPTL INSRPSEYSA  60
SLPTAPSNSR TNPPSVAGGK STSRIFYKTR LCTQFRDGTC RNGEHCTFAH GNSELRHPPP  120
NWQELVREKD REVGNGNWGD DQRMSQRMKI CNKYYSGEEC PYGDKCNFIH ERPHQAKKPR  180
TDAFDQRETS AISIGVTIDP RGTSGNFEQP AFWKTKICSK WEMGICPYGD RCSFAHGQSD  240
LRLSSATYEP EQATSTLSAP RKTTSIPTFN LAATGGNLED GNHPAEDEEH ERRLRWKLKK  300
KVNQIYADWF DNLSPPIGSP TAQDS
Cis-element ? help Back to Top
SourceLink
PlantRegMap678381499
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078936.11e-114zinc finger CCCH domain-containing protein 39 isoform X1
TrEMBLA0A2G9GJN51e-105A0A2G9GJN5_9LAMI; Uncharacterized protein
STRINGXP_009630795.12e-88(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-60C3H family protein