PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678382106
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 504aa    MW: 57199.9 Da    PI: 9.3863
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678382106genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.55.6e-3138122187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW++qe+laLi++r++m+  +++++lk+plWe+vs+km e gf+rs+k+C+ek+en+ k++k++k+g+ ++++++  t+++fdqlea
  678382106  38 RWPRQETLALIKIRSDMDPLFKDSSLKAPLWEQVSRKMGELGFQRSAKKCREKFENIYKYHKRTKDGRASKSEGK--TYRFFDQLEA 122
                8********************************************************************975544..6*******85 PP
2trihelix98.65.5e-31341425186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rW+k e+ aLi++r++++ ++ ++ +k+plWee+s++m++ g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+s+tcpyf+ le
  678382106 341 RWPKAEIEALINLRTNLDLKYHDAGAKGPLWEEISAAMWKMGYKRSSKRCKEKWENINKYYKKVKETKKNR-PEDSKTCPYFHMLE 425
                8********************************************************************98.99*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0253597IPR001005SANT/Myb domain
CDDcd122037.10E-2637102No hitNo description
PfamPF138373.4E-1937123No hitNo description
PROSITE profilePS500906.8993795IPR017877Myb-like domain
PROSITE profilePS500907.747334398IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.600.001338397IPR009057Homeodomain-like
SMARTSM007170.11338400IPR001005SANT/Myb domain
PfamPF138374.4E-22340427No hitNo description
CDDcd122033.31E-26340405No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MVIGDSELMG DPTEAQKGGG ASEVGASTSI PADGAGSRWP RQETLALIKI RSDMDPLFKD  60
SSLKAPLWEQ VSRKMGELGF QRSAKKCREK FENIYKYHKR TKDGRASKSE GKTYRFFDQL  120
EALENNPSLD NPHLSYNNPH ITSAAVLPSS PTPVSVLPPH LPFQPAAYTA ANHHQQQQPS  180
PHFQSLTLSD STTMSSSSST SDEEGEDVRR QGRRRRRRKW KDYLEMMMIQ VIKKQEERQN  240
RLLETLEQRE MERIAKQEAW RTQEMARINR EHDLLARERS MAAAKDAAMI DFLQKFTANN  300
NVLQHPHQPP AEQAPQAEAS ASRKEEESGG GGDNSSASSS RWPKAEIEAL INLRTNLDLK  360
YHDAGAKGPL WEEISAAMWK MGYKRSSKRC KEKWENINKY YKKVKETKKN RPEDSKTCPY  420
FHMLEALHQH KIAARNNNNH LLPSSTSTPL PQQQQWPQPV PLQQQRMYTH NGNSNLGFQE  480
DEDGGGYEMT RSHQPATPSP TAAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208215RRQGRRRR
2209217RQGRRRRRR
3212218RRRRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678382106
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229597.11e-141PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-125TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A4D8YX031e-142A0A4D8YX03_SALSN; Uncharacterized protein
STRINGSolyc12g056510.1.11e-139(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-54Trihelix family protein