PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678382122
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 313aa    MW: 35921 Da    PI: 7.0967
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678382122genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.34.9e-1970152185
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 
                +W+  +v++L++a++++e ++  +   k +W+ +sk+m+erg+++spkqC++k+++ln+ y++++e+ +k+t +e++++ +++d l
  678382122  70 KWSGAMVRLLVTAVSYLEVQIVPR---KEHWRPISKVMAERGYSVSPKQCEDKFNDLNTMYRRLNEILGKGTcCEVVENPSLLDVL 152
                7*****************999876...99******************************************758888888888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.3E-1869179No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDANLSSYRD IDLRAMRFHH HLQQPAHGSS LAFADSSGNA VPIFPGSHLR EHDQKMAGSS  60
GGARATGEMK WSGAMVRLLV TAVSYLEVQI VPRKEHWRPI SKVMAERGYS VSPKQCEDKF  120
NDLNTMYRRL NEILGKGTCC EVVENPSLLD VLNHLPMTAK QEVRRILGQK DLHYEEMCSY  180
HNGNCLNLPP DPELRHSLTL ALASKREDAD YKHKHENDPS GPNIMMMEHR GYDQLGSCSD  240
ALEQKRLWIQ HQMLELERQR LAWMVSSLRE DKELEVMKRE LRIMKMENEQ MALELRQKDK  300
GTTASDEPPK HLL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678382122
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012839235.16e-72PREDICTED: uncharacterized protein LOC105959637
RefseqXP_012839236.16e-72PREDICTED: uncharacterized protein LOC105959637
TrEMBLS8CSQ22e-72S8CSQ2_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.N03227.1.p2e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125851620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.15e-65