PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678382841
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 1441aa    MW: 160830 Da    PI: 6.3934
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678382841genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016797820123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                y+C +C  sF++k  L++H +  H
  678382841 797 YVCAICLDSFTNKKVLESHVQQrH 820
                9******************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.517763791IPR007087Zinc finger, C2H2
SMARTSM003555.7763786IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280765786IPR007087Zinc finger, C2H2
SMARTSM003550.059797820IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.683797820IPR007087Zinc finger, C2H2
PROSITE patternPS000280799821IPR007087Zinc finger, C2H2
SMARTSM003555.4831854IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280833854IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.201897925IPR007087Zinc finger, C2H2
SMARTSM003551.3897920IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280899920IPR007087Zinc finger, C2H2
SuperFamilySSF821991.83E-7211381431No hitNo description
Gene3DG3DSA:2.170.270.104.3E-8011401440No hitNo description
SMARTSM004685.7E-611461270IPR007728Pre-SET domain
PfamPF050333.0E-1211491278IPR007728Pre-SET domain
PROSITE profilePS508679.312071283IPR007728Pre-SET domain
PROSITE profilePS5028018.14412861418IPR001214SET domain
SMARTSM003171.2E-4012861426IPR001214SET domain
PfamPF008566.0E-2112971416IPR001214SET domain
PROSITE profilePS508689.60914251441IPR003616Post-SET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1441 aa     Download sequence    Send to blast
MEVLSCADAH HAGESDDKVS EAAMEPEQVR TDINFDGIPN PAGSYHEVKE NDSCAVLDNF  60
LPSEGCSNGE TFYELELEGQ NLSCYSHGSD DDSEKGNDDH FHGPDFALEN PDAAEDTAES  120
EMATNSSTRS SSHSQANTME TDKPQAVWVK WRGKWQSGIR CARADWPLST LRAKPTHDRK  180
QYHVIFFPRT RNYSWADVLL ICPINEFPHP IAYSSHVIGA KMANDLSVAH RFITQKLAVG  240
MLNILDQLNR EGLVETARDV NILKGFAREA SHCKEYSELG GMLLKLQTEL GLSILWNEVT  300
ILSNEVTQVD PGSDWKSWKQ EVMKWFSFSH PGPNAVGSET ESLSSNENQM SRKRPKLEVR  360
RADAHPHGSL LSCSEAEGSF LKGHDNGNTV PFQSGTPVKE PTPGCSAAAG CTGDVPDKWN  420
NLVVEADNVS KDKVKGAAVT PGTIAKLGVL EFGNHNRQCA AFIESKGRQC VRFANEGEVY  480
CCVHLASRSR ENSAKLGAAH HHDSPMCEGT TVLGTKCKHR ALFGSSFCKK HGPQDEANVM  540
PSVHGIKRKI EDADFNSDSR SFTKHVISGE QWSPFVDRPF GSKLGTVQES SISQKPEQQG  600
VGNNETSCIG SLPLGGAEAC LETPIRHSLY CEKHIPNWLK RARNGKSRII SKEVFLDLLG  660
KCHSRDQKLQ LHQACELFYG LFKSILSLRN PVPKEVQFQW AIAEASKDQR TGHFLMELVS  720
QEKERLKMLW GFGDDQNSLA QSAIEEFPAL LHTRDDNEPA DVIKCKICAE TFPDDQVLGA  780
HWMDSHKKEA QWLFRGYVCA ICLDSFTNKK VLESHVQQRH HVDFVEHCML LQCIPCGSHF  840
GHSEELWLHV LSVHPCDLRL PNDAKQQGDG SWKKAEPTDQ PSLEQMKSEN QSVNRRFVCR  900
FCGLKFDLLP DLGRHHQAAH MGEGAAGLRM MKKGTDFYAQ KLKSGRLNHS TFQKSLNSAS  960
YRIRNRSMQN LNKRIQESAS VGPVDIPIRS ASRDASALGS LADSQCSDVA KVLISEIKKT  1020
KPRPSNSELL EIASSACCRI PLQTSLEAKY GTLPEKVYLR AAKLCSENGV SVVWHQENFV  1080
CPKGCQAAIR PLVLSTVTNS SGNRPKLGAC SPSHPTASDW TMDECHCVID SQHFSTDLLE  1140
KNIILCDDIS FGQESVPVAC VVDENLLNAE GSDGHMMDHS FPWESFTYAT KSMLHHSLFV  1200
ESEALQLGCN CKTAACSPRT CDHVYLLEND YDDAKDIYGY PMQGRFPYDE RGRIILEEGY  1260
LVYECNQRCC CSQDCQNRVL QNGLRVKLEV FKTERKGWAV RAREAICRGT FVCEYIGEVI  1320
DEEETNERRK RYGEEGCRYF FEIDARVNDI SRLIDGQAPY VIDATNYGNV SRYINHSCSP  1380
NLVNHQVLVE SMESQLTHIG FFANRDISVG EELTYDFHYK MLPGEGCPCL CGSSNCRGRL  1440
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mvh_A2e-421178144038297Cryptic loci regulator 4
1mvx_A2e-421178144038297CRYPTIC LOCI REGULATOR 4
6box_A2e-421178144042301Histone-lysine N-methyltransferase, H3 lysine-9 specific
6box_B2e-421178144042301Histone-lysine N-methyltransferase, H3 lysine-9 specific
6bp4_A2e-421178144042301Histone-lysine N-methyltransferase, H3 lysine-9 specific
6bp4_B2e-421178144042301Histone-lysine N-methyltransferase, H3 lysine-9 specific
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone methyltransferase that functions together with its binding partner LDL1/SWP1 as one of the regulators of flower timing in Arabidopsis (PubMed:17224141). Mediates H3K9me2 deposition and regulates gene expression in a DNA methylation-independent manner. Binds DNA through its zinc fingers and represses the expression of a subset of stimulus response genes. May represent a novel mechanism for plants to regulate their chromatin and transcriptional state, which may allow for the adaptability and modulation necessary to rapidly respond to environment or developmental cues (PubMed:23071452). {ECO:0000269|PubMed:17224141, ECO:0000269|PubMed:23071452}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678382841
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099261.10.0histone-lysine N-methyltransferase SUVR5
SwissprotO648270.0SUVR5_ARATH; Histone-lysine N-methyltransferase SUVR5
TrEMBLA0A4D9ANX20.0A0A4D9ANX2_SALSN; Histone-lysine N-methyltransferase SUV39H
STRINGMigut.H00513.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA932334
Publications ? help Back to Top
  1. Baumbusch LO, et al.
    The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes.
    Nucleic Acids Res., 2001. 29(21): p. 4319-33
    [PMID:11691919]
  2. Caro E, et al.
    The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner.
    PLoS Genet., 2012. 8(10): p. e1002995
    [PMID:23071452]