PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678382920
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 168aa    MW: 19160.9 Da    PI: 8.4277
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678382920genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.85.3e-32959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  678382920  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
               79***********************************************96 PP
2K-box592.1e-20861401266
      K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiR 66 
                + ++s+++e+ kLk+++e Lq+ qR+llGedL+sL+l++L+ +e+qLe+sl  iR
  678382920  86 ELEQSSYKEYLKLKARYEALQQYQRQLLGEDLGSLNLNDLEAIEHQLESSLGLIR 140
                457999************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.207161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-34279IPR002100Transcription factor, MADS-box
CDDcd002656.20E-47278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-333859IPR002100Transcription factor, MADS-box
PfamPF014868.4E-1688140IPR002487Transcription factor, K-box
PROSITE profilePS512979.03388168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
PDMMKTLERY QKCSYGSLEV GNPGRELEQS SYKEYLKLKA RYEALQQYQR QLLGEDLGSL  120
NLNDLEAIEH QLESSLGLIR YDDPVTSGQM TGASNSQTVN GLLPVWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-21170169MEF2C
5f28_B7e-21170169MEF2C
5f28_C7e-21170169MEF2C
5f28_D7e-21170169MEF2C
6byy_A7e-21174173MEF2 CHIMERA
6byy_B7e-21174173MEF2 CHIMERA
6byy_C7e-21174173MEF2 CHIMERA
6byy_D7e-21174173MEF2 CHIMERA
6bz1_A7e-21174173MEF2 CHIMERA
6bz1_B7e-21174173MEF2 CHIMERA
6bz1_C7e-21174173MEF2 CHIMERA
6bz1_D7e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678382920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099041.16e-84developmental protein SEPALLATA 1 isoform X2
SwissprotQ8LLR21e-75MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2G9G3V81e-89A0A2G9G3V8_9LAMI; MADS box transcription factor
STRINGXP_004507287.12e-78(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.19e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]