PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678383593
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 76aa    MW: 8580.7 Da    PI: 8.8001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678383593genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.6e-073421955
               HHHHHHCTSCC.C.....TTS-STCHHHHHHHHHHHHHHH CS
        HLH 19 afeeLrellPk.as..kapskKlsKaeiLekAveYIksLq 55
                +++L++ lP+  s  + +s K+s + ++ +A+ YI+sLq
  678383593  3 LLSRLQQTLPQiHShrSRRSDKVSASRVVHEACSYIRSLQ 42
               689********999**9**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.7E-5352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-6356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MDLLSRLQQT LPQIHSHRSR RSDKVSASRV VHEACSYIRS LQREAGELSQ RLSCVLASKD  60
VESDEAVVAR SSLMRD
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678383593
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417579.12e-21transcription factor PRE6
RefseqXP_021807558.12e-21transcription factor PRE6
SwissprotQ9LJX13e-19PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A251R4076e-20A0A251R407_PRUPE; Uncharacterized protein
TrEMBLA0A314ZMB56e-20A0A314ZMB5_PRUYE; Transcription factor PRE6
STRINGVIT_01s0026g02030.t011e-20(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-21bHLH family protein