PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678384207
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 198aa    MW: 22370.6 Da    PI: 6.6838
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678384207genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.61.2e-21250149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k ie++  r+vtfskRr g++KKA ELS+LC+a++a+iifs  g+ y +
  678384207  2 KLIEDENARTVTFSKRRVGVFKKATELSILCGARIALIIFSLAGRAYSF 50
               569*****************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.694154IPR002100Transcription factor, MADS-box
SMARTSM004326.6E-22153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.26E-21168IPR002100Transcription factor, MADS-box
PfamPF003194.4E-22450IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-111631IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-113152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MKLIEDENAR TVTFSKRRVG VFKKATELSI LCGARIALII FSLAGRAYSF GHPDVDSIIN  60
AFFHRNPLPE PEHSAHGLRI NDLVVMQIKQ ELDQKKEELQ ALKTKGKKLT AYLEGNPFQV  120
SDDRVSMLEM FQLRGLRKTL DKVRQDVWCR FNEDQAADEA PLQGVVARAE KDAENIANTA  180
SEEVGSHVDP IPSDWLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678384207
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827635.13e-44PREDICTED: uncharacterized protein LOC105948920
TrEMBLS8DI544e-52S8DI54_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.I00404.1.p7e-46(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1565666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-27AGAMOUS-like 62