PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678384274
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 164aa    MW: 18083.2 Da    PI: 6.7198
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678384274genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.82.8e-41191191101
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrr+C+  Cvlapyfp ++p kf ++h++FGasn++kll++lpe +r da+ss+vyeA+ar+rdPvyG++g+i  lq+q+++l++ela+++++
  678384274  19 PCAACKILRRRCSMTCVLAPYFPPTEPLKFSIAHRVFGASNIIKLLHELPEVQRADAVSSMVYEANARLRDPVYGCAGFICLLQRQISELQSELARAQAQ 118
                7***********************************************************************************************9998 PP

     DUF260 101 l 101
                +
  678384274 119 I 119
                5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.45418119IPR004883Lateral organ boundaries, LOB
PfamPF031958.9E-4119116IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAEVKFAGSA ATSSVVLIPC AACKILRRRC SMTCVLAPYF PPTEPLKFSI AHRVFGASNI  60
IKLLHELPEV QRADAVSSMV YEANARLRDP VYGCAGFICL LQRQISELQS ELARAQAQIL  120
NIQCQNTEMR DLIAKCVLPP LDETPDDMVA ALLHSPSLEY IFNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4491241116LOB family transfactor Ramosa2.1
5ly0_B3e-4491241116LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678384274
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077047.17e-67LOB domain-containing protein 1-like
SwissprotQ9LQR03e-59LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2G9G2A42e-64A0A2G9G2A4_9LAMI; Uncharacterized protein
TrEMBLA0A4D9AES91e-64A0A4D9AES9_SALSN; Uncharacterized protein
STRINGMigut.F02029.1.p4e-64(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-61LOB domain-containing protein 1