PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678384977
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 440aa    MW: 48533.4 Da    PI: 8.4847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678384977genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.6e-15268314455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn +Er+RRdri++++ eL++l+P +       ++Ka+ L  A++YIksLq
  678384977 268 VHNLAERKRRDRIKEKMKELQQLIPCS-----NNVDKASLLDDAIQYIKSLQ 314
                6*************************7.....479****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-17262322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-19262331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-16267318No hitNo description
PfamPF000101.5E-12268314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-16270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MRCLPMHVRP HSCITRPALT FRTKATLNAF GTSTQREGKC SRMRVMESNY DERGGKNLLH  60
PTYINGGEIS ELVCINGRVV AQNLKSAAAC EQASFFTDED GWPPWMTSPA DDPFDARAAA  120
IPAPLTPSYP VMEFPQFVSK QSENSMRWRN FSHFWGLRKP PKLVAKTPVP EAIVSTVVES  180
NETPFGREDP THTSSPGRTP PASGANQNLK HNRPEKTRLP ASETRIRKER DGEDADYLNE  240
VTMEGEAGGS ESTKRFHRLC KRSRSAEVHN LAERKRRDRI KEKMKELQQL IPCSNNVDKA  300
SLLDDAIQYI KSLQLQLQMM SMVCGMVPMM YSGMQPCMPL CGMAMGMGMN QPIPPYTPTV  360
PSLSRPCPAA ATHIGPMCQI LHPFQLQQVS VSDTSIIQAG NQTDRPPVLS ISTADAYQQP  420
CSGINTITAP ATAGNGTQAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272277ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678384977
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022874604.17e-45transcription factor PIF1 isoform X3
RefseqXP_022874605.17e-45transcription factor PIF1 isoform X3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-32phytochrome interacting factor 3-like 5