PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678385214
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 139aa    MW: 15635.8 Da    PI: 10.1511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678385214genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-201566156
        AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
               s+++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa a++ a++ l+g+
  678385214 15 SQFRGVRKRP-WGRYAAEIRDpWK----KTRKWLGTFDTAEEAAHAYDVAARTLRGA 66
               789*******.**********883....5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.45E-291574No hitNo description
SuperFamilySSF541715.04E-221573IPR016177DNA-binding domain
PROSITE profilePS5103222.4181673IPR001471AP2/ERF domain
SMARTSM003802.8E-331679IPR001471AP2/ERF domain
PfamPF008472.3E-121665IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-311673IPR001471AP2/ERF domain
PRINTSPR003674.0E-101728IPR001471AP2/ERF domain
PRINTSPR003674.0E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MNPQQVAPPY LKKGSQFRGV RKRPWGRYAA EIRDPWKKTR KWLGTFDTAE EAAHAYDVAA  60
RTLRGAKAKT NFAYPGPPQT QQPFYWFPMD FTAPPHHRVY HVLEGCGAGG GQEQMKSSGG  120
AQEKEPVVLF DLNLPPPLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-191372262ATERF1
3gcc_A5e-191372262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678385214
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082648.12e-41ethylene-responsive transcription factor 14
SwissprotQ9FE675e-30ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A2Z7ATH41e-39A0A2Z7ATH4_9LAMI; Uncharacterized protein
STRINGMigut.N02188.1.p3e-36(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.17e-24erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]