PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678386220

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 261aa MW: 28977.4 Da PI: 5.8241

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678386220	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.6e-12	193	238	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + ++Le+Av+YIk+Lq 678386220 193 SIAERVRRTKISERMRKLQELVPNM----DKQTNTCDMLELAVDYIKDLQ 238 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.888	187	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-16	190	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.00E-12	191	242	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.5E-15	192	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-13	193	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-9	193	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MMNNENQRSA QMGSSGLTRY CSAPSSYLVS LLGSPRKDSP YESDDLAELF APPPPRKTEP 60 PLPQMIPREN SFWGSEVESS GSGSSGLIRY SSSPAGLLAD INLENELGHL RGIGTFPTGT 120 GGNRFSWEDS NSNSLLLSDD FLNGFLDDDN QGSESGTLPR HLSFPKESFE KLLQDSVPCK 180 IRARRGCATH PRSIAERVRR TKISERMRKL QELVPNMDKQ TNTCDMLELA VDYIKDLQTQ 240 VKSLCEDRDK CSCSARISYR S

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00646	PBM	Transfer from LOC_Os08g39630	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678386220

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090494.1	3e-71	transcription factor bHLH130-like
Swissprot	Q66GR3	9e-48	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A0H3YC40	3e-75	A0A0H3YC40_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.D00568.1.p	1e-63	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	2e-46	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]