PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678386920
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 145aa    MW: 16418.5 Da    PI: 7.5283
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678386920genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.3e-161966555
        AP2  5 GVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               GVr  +k+g+++AeIrd  +    +  r++lg+f+taeeAa  +++a++k +g
  678386920 19 GVR-ERKWGKYAAEIRDsIR----TkNRVWLGTFDTAEEAALVYDQAALKTRG 66
               999.555**********432....359***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.5E-301680IPR001471AP2/ERF domain
PROSITE profilePS5103220.7711674IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-211776IPR016177DNA-binding domain
PRINTSPR003676.4E-81728IPR001471AP2/ERF domain
PfamPF008471.8E-101966IPR001471AP2/ERF domain
CDDcd000185.35E-261976No hitNo description
Gene3DG3DSA:3.30.730.102.3E-271974IPR001471AP2/ERF domain
PRINTSPR003676.4E-84056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MDQEPTPTAS TSDKKRLLGV RERKWGKYAA EIRDSIRTKN RVWLGTFDTA EEAALVYDQA  60
ALKTRGASAQ LNFPWSFVEK SLAGLNINWA QWESPAKAIK EFHRKAKRGS SSKRIEAMKE  120
DYLVVLEDLG QELLDELLSE SSVSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-22177175Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678386920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085905.11e-44ethylene-responsive transcription factor 1B-like
TrEMBLA0A1U7VS017e-41A0A1U7VS01_NICSY; ethylene-responsive transcription factor 1B-like
STRINGXP_009764685.11e-41(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-28ethylene-responsive element binding factor 15