PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678387022

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

G2-like

Protein Properties

Length: 362aa MW: 39656.5 Da PI: 8.2652

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678387022	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.6e-32	199	252	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ 678387022 199 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 252 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-15	196	252	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-28	197	252	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.8E-24	199	252	IPR006447	Myb domain, plants
Pfam	PF00249	4.9E-7	200	251	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MSVEGVFLEL SSSKIPDLSL QISLPNCESS SSKICASKAC VSLHTFDLDT DLSLATTQTT 60 DAPGSEKEQN PYHQCSPSHH GGIRPIKGIP VYPTNPQFPL EKDPNMGCGD LLSFSKFTGV 120 FPNRFYQMPS SSPPTSISHP YFAGGLDHNP SASAAYRSRF PVLQPQHYGV GLLPEPPHHG 180 IMRSRFVPKM PPKRSMRAPR MRWTSSLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL 240 AHVKSHLQMY RTVKTTDKPA ASSGQSEVSG EDDLSPRRAR SIGIRPFADP QHESDPNYTP 300 SIWRHPSHSG GDGWLRLNAA AESQSVQGPS SLSSTSDHKD VIWKSSLSEE RATFSSDHSK 360 SA

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MSVEGVFLEL SSSKIPDLSL QISLPNCESS SSKICASKAC VSLHTFDLDT DLSLATTQTT  60
DAPGSEKEQN PYHQCSPSHH GGIRPIKGIP VYPTNPQFPL EKDPNMGCGD LLSFSKFTGV  120
FPNRFYQMPS SSPPTSISHP YFAGGLDHNP SASAAYRSRF PVLQPQHYGV GLLPEPPHHG  180
IMRSRFVPKM PPKRSMRAPR MRWTSSLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL  240
AHVKSHLQMY RTVKTTDKPA ASSGQSEVSG EDDLSPRRAR SIGIRPFADP QHESDPNYTP  300
SIWRHPSHSG GDGWLRLNAA AESQSVQGPS SLSSTSDHKD VIWKSSLSEE RATFSSDHSK  360
SA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-17	200	254	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-17	200	254	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-17	200	254	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-17	200	254	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-17	200	254	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-17	200	254	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-17	200	254	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-17	200	254	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678387022

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020551952.1	3e-85	transcription repressor KAN1 isoform X2
TrEMBL	A0A2G9GLA3	2e-83	A0A2G9GLA3_9LAMI; Uncharacterized protein
STRING	VIT_04s0043g00340.t01	2e-68	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2468	23	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	3e-55	G2-like family protein