PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678388702
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 236aa    MW: 26565.7 Da    PI: 10.563
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678388702genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.9e-163481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+t Ed ll  +++q+G g+W++ +++ g+ R++k+c++rw +yl
        678388702 34 RGPWSTKEDALLSSYIQQHGVGRWRSLPEKAGLLRCGKSCRLRWMNYL 81
                     89******************************99************97 PP
2Myb_DNA-binding48.22.5e-1587132148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++ E +l+++++++lG++ W++Ia +++ gRt++++k++w+++l
        678388702  87 RGNMSEAEIDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 132
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0422981IPR017930Myb domain
SuperFamilySSF466892.51E-2731128IPR009057Homeodomain-like
SMARTSM007171.0E-113383IPR001005SANT/Myb domain
PfamPF002495.7E-143481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-213588IPR009057Homeodomain-like
CDDcd001675.33E-93681No hitNo description
PROSITE profilePS5129423.18982136IPR017930Myb domain
SMARTSM007172.4E-1586134IPR001005SANT/Myb domain
PfamPF002493.9E-1487132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2289135IPR009057Homeodomain-like
CDDcd001676.85E-1189132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MLHVHSAAKT RKGESFRVRA MGRSPCCPKV GLRRGPWSTK EDALLSSYIQ QHGVGRWRSL  60
PEKAGLLRCG KSCRLRWMNY LRPGIKRGNM SEAEIDLILR LHRLLGNRWS LIAGRIPGRT  120
DNEIKNYWNT HLHKKTTTSP SRHKEFVKPE GGRNSISSSK NDNSATQGTK IYAPKAIRIC  180
ASTSVKKLQP SPPPPQPPVE VEEADLLGLG WGMPPECAGD ERMLGKVYDE YLQLLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24321385110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678388702
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070362.12e-76transcription repressor MYB5-like
SwissprotQ388502e-61MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A286M5H53e-75A0A286M5H5_SALMI; Transcription factor
STRINGPGSC0003DMT4000316072e-72(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-64myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]