PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678390607
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 252aa    MW: 28028.6 Da    PI: 8.5521
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678390607genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d ++++G+g +W + +++ g++R++k+c++rw++yl
        678390607 14 KGPWSPEEDAKLKDFIHKFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding35.81.8e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd  +  +    G++ W+ Ia  ++ gRt++++k++w++
        678390607  69 GEFSDEEDRVICSLYSTIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.427962IPR017930Myb domain
SuperFamilySSF466895.01E-2712109IPR009057Homeodomain-like
SMARTSM007173.8E-121364IPR001005SANT/Myb domain
PfamPF002492.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-241569IPR009057Homeodomain-like
CDDcd001677.75E-101662No hitNo description
PROSITE profilePS5129421.12763117IPR017930Myb domain
SMARTSM007171.2E-1067115IPR001005SANT/Myb domain
PfamPF002496.9E-1069111IPR001005SANT/Myb domain
CDDcd001671.22E-770113No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRAPCCDKS AVKKGPWSPE EDAKLKDFIH KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRVIC SLYSTIGSRW SIIAGQLPGR TDNDIKNYWN TKLKKKLLSA  120
GSNKGLPAPP PPLAAAAQPH FPPAAFYGEP SSLSTPQSSF FFNNSNPTSF QSDFQSLLSY  180
CSNSPSGYQI TFGEVKNEYL IPDRTLTGGP VDQKQPLDNV TQQQQMQLEE VKQLIDSSPG  240
IHGIDDSFLY YY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678390607
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225349.14e-82PREDICTED: transcription factor RAX2-like
TrEMBLA0A2G9GX664e-81A0A2G9GX66_9LAMI; Transcription factor, Myb superfamily
TrEMBLA0A314KTV58e-81A0A314KTV5_NICAT; Transcription factor myb36
STRINGXP_009600706.17e-80(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-75myb domain protein 36