PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678390964
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 581aa    MW: 64314.4 Da    PI: 7.3389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678390964genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.1e-11395437754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                ++ErrRR+++N+++  Lr+++P  +      K++ a+iL  A++Y+k+L
  678390964 395 MAERRRRKKLNDRLYMLRSVVPRiS------KMDRASILGDAIDYLKEL 437
                79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.593388437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16391453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14394443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8394437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.31E-12395441No hitNo description
Gene3DG3DSA:4.10.280.103.7E-16395450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.52E-5514570No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MGDARSVRVG SASRRSLEVQ VTQKVKKNQK KKKIMAESQK EQFFRTSFEA LLDNLFGKAS  60
RQKSGFSLRG NLKKEEVLSR VNSNSTGLMD GDKEQERGFS SEQNNSRDRN LEESKQQMVE  120
MGALSTFKSM LEAEEEDWYL ATGYPFSPSF TDSSQMLLQP VDSSASCSPT AASVFNNLDA  180
PHQNVNYCLQ TSPLGNPICE YPLEGSFDLG YESGYLESAL NRQTGIRTGS FNDLVSKSQM  240
GSLNLCQNIQ FPSSYLSQLL QGGNGFGAFG NGESSMQGNS VFLNSTKSLK PLDNFASFGV  300
DPTVFQKMAA PKRNLVENVE VEAHLTCLKS LVEFSEEIKE KRKMSTGEDL EYARIDGSNF  360
NYDSDDQLFE NKPDDRNKTG DVKGKKKGLP AKNLMAERRR RKKLNDRLYM LRSVVPRISK  420
MDRASILGDA IDYLKELLQK INDLKNELES TPGSSSTSQS GNSYTLTPTG PSLQSKIKDE  480
ICPGAFAMSS PTAQAARVEV KLREGRAVNI HMLCSRRPGL LLSTLQTMDN LGLDVRQAVI  540
SCFNGFVLDV FRAEQCGDDQ ELNPEHIKAV LLNSAGFHGL A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13390451674Transcription factor MYC2
5gnj_B2e-13390451674Transcription factor MYC2
5gnj_E2e-13390451674Transcription factor MYC2
5gnj_F2e-13390451674Transcription factor MYC2
5gnj_G2e-13390451674Transcription factor MYC2
5gnj_I2e-13390451674Transcription factor MYC2
5gnj_M2e-13390451674Transcription factor MYC2
5gnj_N2e-13390451674Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384402KKKGLPAKNLMAERRRRKK
2396403ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678390964
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073188.10.0transcription factor ICE1
TrEMBLA0A2G9G4590.0A0A2G9G459_9LAMI; Uncharacterized protein
STRINGXP_009769541.11e-162(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27032452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-95bHLH family protein