PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678391959
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family E2F/DP
Protein Properties Length: 511aa    MW: 56250.5 Da    PI: 6.7451
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678391959genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.53.4e-26169234171
    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                r+++sL llt+kf++l++++e+g+++ln +a++L   +v  ++RRiYDi+NVLe+++liek+ kn+i+wkg
  678391959 169 RYDSSLSLLTTKFISLVKQAEDGELDLNVAADTL---QV--QKRRIYDITNVLEGIGLIEKTLKNKIQWKG 234
                6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-28166236IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-16169232IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.3E-34169234IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.7E-24171234IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.14E-26247359No hitNo description
SuperFamilySSF1440741.28E-17247287No hitNo description
PfamPF164212.1E-18250356IPR032198E2F transcription factor, CC-MB domain
SuperFamilySSF1440741.28E-17320360No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MAAKPMREAA ATPPAAASKG SIPRQQHTPP AGIRRHLPFA SMRAPFPNAD DYHKFPTPLG  60
AASLSGTGDQ LADSIVVKSP VLKRKARNGN IAVDSSVCTS PGHSDMSNCT LRTPVSCKGG  120
RVKTTINNNG GRLCMFSKLV NVKFLGAQSV VSQHSADAAS PQTPASGCRY DSSLSLLTTK  180
FISLVKQAED GELDLNVAAD TLQVQKRRIY DITNVLEGIG LIEKTLKNKI QWKGLDPSRP  240
AGVKTDINRL QVEFQNLSIE ERSLDERIRN MQDKLRILSE DEKNQQYVLF SHFSCYGMHK  300
VKEYYISMWL LTRPGSSRWL FANEDDIKSL PCFQNQTLIA IKAPHGTTLE VPDPDEVFRH  360
ALVFPSLLVS NTAHHVLGKS QFSEFKKVED TDKFYQPADL PLPSCSTSNA VSVVPPQVQS  420
PTWKDPQHNT LDSPQECAGG MTRIIPSNLD NDTDYWFSSD ADFSTTDLWN MDDGGVPLWN  480
NADLLHGLEE MQHVQPSSVE DPPAAADVPS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A5e-26164237276PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678391959
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094221.11e-151transcription factor E2FA
TrEMBLS8C5A01e-139S8C5A0_9LAMI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10772484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.12e-94E2F transcription factor 3