PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678392400

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NF-YA

Protein Properties

Length: 153aa MW: 16872.5 Da PI: 10.0085

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678392400	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	94.5	1.3e-29	18	74	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++Il+RR++Rak e++ kl k kpylheSRh+hA+ R Rg gGrF 678392400 18 DEPIYVNAKQYHGILRRRESRAKHEARCKL-VKRAKPYLHESRHRHAISRVRGAGGRF 74 79**************************.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.3E-31	16	77	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	32.056	17	77	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.9E-25	19	74	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.9E-22	20	42	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.9E-22	51	74	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MMGAPCGRIP LPAKLLDDEP IYVNAKQYHG ILRRRESRAK HEARCKLVKR AKPYLHESRH 60 RHAISRVRGA GGRFISTKKQ QTPPTEQQPP LNSYCSIVPV AEHQLTVNVE LPLQDAGNGL 120 IDNGKVIHAS SVPGEMPCHP CSSSLALSNV KCN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-22	18	83	2	67	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678392400

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553571.1	5e-37	nuclear transcription factor Y subunit A-3 isoform X3
Refseq	XP_020553572.1	5e-37	nuclear transcription factor Y subunit A-3 isoform X5
Refseq	XP_020553573.1	5e-37	nuclear transcription factor Y subunit A-3 isoform X5
Swissprot	Q9SYH4	8e-30	NFYA5_ARATH; Nuclear transcription factor Y subunit A-5
TrEMBL	A0A2G9HRD3	1e-34	A0A2G9HRD3_9LAMI; CCAAT-binding factor, subunit B (HAP2)
STRING	XP_010666451.1	4e-34	(Beta vulgaris)
STRING	POPTR_0006s14740.1	7e-34	(Populus trichocarpa)
STRING	Migut.J00955.1.p	9e-35	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5009	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	2e-29	nuclear factor Y, subunit A5

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gao W,Liu W,Zhao M,Li WX NERF encodes a RING E3 ligase important for drought resistance and enhances the expression of its antisense gene NFYA5 in Arabidopsis. Nucleic Acids Res., 2015. 43(1): p. 607-17 [PMID:25514924] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Du Q,Zhao M,Gao W,Sun S,Li WX microRNA/microRNA* complementarity is important for the regulation pattern of NFYA5 by miR169 under dehydration shock in Arabidopsis. Plant J., 2017. 91(1): p. 22-33 [PMID:28332758] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]