PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678392586
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 161aa    MW: 18008.2 Da    PI: 4.6787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678392586genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-053153123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C++ Fs+   L  H++ H
  678392586 31 FRCNFCKRGFSNAQALGGHMNIH 53
               89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-62957No hitNo description
Gene3DG3DSA:3.30.160.603.5E-43055IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2613158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MSVRPSDQEP SEQMISWGGG VGGGGERGRF FRCNFCKRGF SNAQALGGHM NIHRKDRAKL  60
REFSEENLLS LDISKSNDYD EKKRSEDLKE ESRVADVVVS AAVSVEEENL IPLLGDDPVI  120
GCDRRVFLEE NGELRKSVVG ELDLELRLGM EPPRVESKEV L
Cis-element ? help Back to Top
SourceLink
PlantRegMap678392586
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454746.11e-36PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A1S3YRA13e-35A0A1S3YRA1_TOBAC; probable transcriptional regulator RABBIT EARS
STRINGXP_009596834.12e-35(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-15C2H2 family protein