PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678393046
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 228aa    MW: 25810.2 Da    PI: 8.849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678393046genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-1082129455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++sLq
  678393046  82 SHSLAERVRREKISERMKLLQSLVPGC----HKVTGKASMLDEIINYVQSLQ 129
                8*************************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.81E-1176133No hitNo description
SuperFamilySSF474596.28E-1876146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-1878150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.23478128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-782129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1184134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MATSSSFQSH SSTRHFDSQA PQRSSPSSIL TGSTLRMKKR RKAPMESKGK DAKKVKEEKE  60
PGQEPPTGYI HVRARRGQAT DSHSLAERVR REKISERMKL LQSLVPGCHK VTGKASMLDE  120
IINYVQSLQN QVEVLSMKLA SMNPMVYDFG TEIESFMVRP DQDLNSFPSL EQCFPPMEND  180
FTAFAPLHQT LATQSFHHQG SKQGMWEDVE EQRHRMAMSN TGGDCIFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678393046
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022889922.14e-64transcription factor bHLH137-like
SwissprotQ93W883e-53BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A022R0093e-66A0A022R009_ERYGU; Uncharacterized protein
STRINGMigut.O00350.1.p3e-63(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]