PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678393462

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 246aa MW: 26787.2 Da PI: 8.3293

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678393462	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.0004	147	185	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L +l+ + +K + a++L +A+ YIk Lq 678393462 147 RKEKLGDRINALHQLVSPF-----GKTDAASVLLEAIGYIKFLQ 185 5677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.182	135	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-10	146	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.99E-5	147	189	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-7	149	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MSPSGQPMVE NTSVSWPAFA PWHLSGEQPV SVNLSSSCED FPGSWSQLLR DGMIAEDEEK 60 KMIMKEMETK KQVFNPQTSS SSYGWSGVEA DVKQEKTSTL DLRSSKPSDR KHPNSNLQSY 120 NKSTGSVKKP KVEARTSGQG AFKVQVRKEK LGDRINALHQ LVSPFGKTDA ASVLLEAIGY 180 IKFLQSQIQT LSLPYMGSHR SARSSSSEEC AGDLRSRGLC LVPISGSLVD GAEAHGSDHC 240 GLLPLR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678393462

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020958622.1	3e-41	transcription factor bHLH68 isoform X2
Refseq	XP_029149257.1	3e-41	transcription factor bHLH68 isoform X2
STRING	VIT_11s0016g03560.t01	8e-38	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	7e-33	bHLH family protein