PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678394860
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NF-YA
Protein Properties Length: 251aa    MW: 27558.5 Da    PI: 8.0092
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678394860genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.81.5e-32160216158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq+Rak+e ekkl  k+rkpylheSRh+hA++R+RgsgGrF
  678394860 160 QEPVYVNAKQYHGILRRRQSRAKAELEKKL-VKARKPYLHESRHRHAMNRARGSGGRF 216
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.7E-35158219IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.087159219IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-28161216IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-24162184IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860164184IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.5E-24193216IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MQSNPKSGSQ REPKFDDAGD SSAPSAPPWW NNAVSGSLDP TLTRRNSCDT SSNEHSADGI  60
WLSEGGINEE DDDNAKESPS TTIQQDKNCE RDGQVPPTLY PRIGGTFAQG RQLIGLSVAC  120
GSNPYEPYYA GLIAPYGQPL VPHLYDMHHA RIPLPLELTQ EPVYVNAKQY HGILRRRQSR  180
AKAELEKKLV KARKPYLHES RHRHAMNRAR GSGGRFAKKS SDADAAEATT VSGSESIRTH  240
INLSEAPCPS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-21159216158NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678394860
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080345.18e-88nuclear transcription factor Y subunit A-1-like
RefseqXP_011080346.18e-88nuclear transcription factor Y subunit A-1-like
RefseqXP_011080347.18e-88nuclear transcription factor Y subunit A-1-like
RefseqXP_011080348.18e-88nuclear transcription factor Y subunit A-1-like
RefseqXP_011080349.18e-88nuclear transcription factor Y subunit A-1-like
RefseqXP_011080350.18e-88nuclear transcription factor Y subunit A-1-like
RefseqXP_020550734.18e-88nuclear transcription factor Y subunit A-1-like
RefseqXP_020550735.18e-88nuclear transcription factor Y subunit A-1-like
TrEMBLA0A4D8YDX96e-91A0A4D8YDX9_SALSN; Uncharacterized protein
STRINGMigut.N02320.1.p2e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.47e-35nuclear factor Y, subunit A1