PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678396642

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 577aa MW: 63858.8 Da PI: 6.147

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678396642	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.5e-12	432	471	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +rRR+riN+++ eL+el+P++ K +Ka++L +A+eY+k+L 678396642 432 QRRRNRINEKLKELQELIPNS-----IKTDKASVLDQATEYLKML 471 8*****************9.....6**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.922	422	471	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-10	428	477	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.03E-13	430	496	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-13	431	480	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-9	432	471	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.20E-12	432	476	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MPLERKHGSG DYASFLNDIS SWVDDDFSEL VFENGQLMVK SQAISASRAP LTTNSHFSPS 60 GAHVDTVKGR TSFSEAEKFV NIESFLHDKS PLLLSGELDL CLKDEMVPWL GYPLGDYTER 120 VCSSEVFSEV SRDVGNQFST DNSSDPVVES GNGGEEGLAD LHCCNDALKT YNFPSKANVL 180 WPPQDTLIPG GAASDLLNIR SIQTDDKRES QIKGLPMTAS KLVSFPHISR HTTNFQKPKE 240 VLTSVLSAEG EMQSQGKGLS VNDSIEKRMS PALYGSMSKG NEPHVPFVPG TLSYSEQPVI 300 DLLDQERNDF LQNDAAINHK NFPSSIDFVK QIPGDGRSLE THIACSSRGI VPRADIISCN 360 KKNTCNMKFD DSEDSDGHSS VSILECAGTK LSSPPQNSSG SKRRRTAEAT SYSAFYQISI 420 SEHGFLSMIY QQRRRNRINE KLKELQELIP NSIKTDKASV LDQATEYLKM LKLQVQAISM 480 GKGLCMSSML PPGMQAMYPY HFTHILQMGI GSGMDAQFRV GMPPNDRFLI SPATPMHQPH 540 PSMLPPVVHP NLQHPEYQTS EVRVNSLHDH HQWRPIP

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MPLERKHGSG DYASFLNDIS SWVDDDFSEL VFENGQLMVK SQAISASRAP LTTNSHFSPS  60
GAHVDTVKGR TSFSEAEKFV NIESFLHDKS PLLLSGELDL CLKDEMVPWL GYPLGDYTER  120
VCSSEVFSEV SRDVGNQFST DNSSDPVVES GNGGEEGLAD LHCCNDALKT YNFPSKANVL  180
WPPQDTLIPG GAASDLLNIR SIQTDDKRES QIKGLPMTAS KLVSFPHISR HTTNFQKPKE  240
VLTSVLSAEG EMQSQGKGLS VNDSIEKRMS PALYGSMSKG NEPHVPFVPG TLSYSEQPVI  300
DLLDQERNDF LQNDAAINHK NFPSSIDFVK QIPGDGRSLE THIACSSRGI VPRADIISCN  360
KKNTCNMKFD DSEDSDGHSS VSILECAGTK LSSPPQNSSG SKRRRTAEAT SYSAFYQISI  420
SEHGFLSMIY QQRRRNRINE KLKELQELIP NSIKTDKASV LDQATEYLKM LKLQVQAISM  480
GKGLCMSSML PPGMQAMYPY HFTHILQMGI GSGMDAQFRV GMPPNDRFLI SPATPMHQPH  540
PSMLPPVVHP NLQHPEYQTS EVRVNSLHDH HQWRPIP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678396642

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4965	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	4e-21	phytochrome interacting factor 3