PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678396860
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Dof
Protein Properties Length: 264aa    MW: 29037.2 Da    PI: 9.59
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678396860genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.91.2e-3998157362
     zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                ++alkcprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg rknk++s
  678396860  98 QQALKCPRCDSINTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGYRKNKRAS 157
                7899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2485149IPR003851Zinc finger, Dof-type
PfamPF027016.0E-3499155IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.115101155IPR003851Zinc finger, Dof-type
PROSITE patternPS013610103139IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MKGSSNCPPS FSCLLLLTAS VFPSHCVDPP NLRRAKGNGF FSFPSSPGRE GVGLGCSLLR  60
RRSCKSFKKY PICLQETLES ILVSAKPHQE KKPRPADQQA LKCPRCDSIN TKFCYYNNYS  120
LSQPRYFCKS CRRYWTKGGT LRNVPVGGGY RKNKRASSFS SSKRSQDHQV TAATAPATTH  180
TIQSFPPVPY DPTLAVSAFQ KQSEFDMGIW GVPSLCDLGI WADPNLPIGD VVLGMNMNCS  240
SLFYGGMPGN QEAGTPFEAP NLQR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678396860
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089362.12e-53dof zinc finger protein DOF2.1
TrEMBLA0A1Q3BTQ12e-52A0A1Q3BTQ1_CEPFO; Zf-Dof domain-containing protein
STRINGXP_002532252.12e-49(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38000.12e-31DNA binding with one finger 4.7