PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678397134
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 173aa    MW: 19075.1 Da    PI: 7.2769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678397134genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-131662354
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                +h+e+ErrRR+riN  +++L+++lP+       K +Ka+ L +Av+ +k+L
  678397134 16 NSHKEAERRRRNRINGHIATLKTILPNV-----VKTDKASLLGEAVRRVKEL 62
               68*************************7.....6*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1991362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-111662IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-131665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-101767No hitNo description
SuperFamilySSF474599.03E-141773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-121968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.7E-799168No hitNo description
CDDcd048737.38E-7101166No hitNo description
Gene3DG3DSA:3.30.70.2608.8E-6101164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEDGGDMETR AAASSNSHKE AERRRRNRIN GHIATLKTIL PNVVKTDKAS LLGEAVRRVK  60
ELNKAAQELS SCSTEELELF PSETDELKLC PCDDPGLVKA TLCCEDRPDI LMDLVQALKS  120
VEAKVVRAEM STVGGRTMSV LWIRLGIHNQ TDVGLAMLRR ALKLVIDKCA FCP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678397134
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097486.22e-65transcription factor bHLH30-like
SwissprotQ9S7Y13e-31BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2G9G2389e-70A0A2G9G238_9LAMI; Uncharacterized protein
STRINGMigut.H02300.1.p6e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72832231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.14e-32bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]