PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678397298
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 222aa    MW: 24642.9 Da    PI: 6.7048
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678397298genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.95.1e-36111111100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                aCaaCk++rrkC++dC+lapyfpa+++++f+nvh+lFG+s+v+k+l++l +e+ ++da++s++yeAe+r r Pv G+  vi+kl q+  ++ ael+++ +
  678397298  11 ACAACKYQRRKCTPDCTLAPYFPASDSRTFQNVHRLFGVSKVTKTLDSLTREDhKHDAIKSMIYEAEIRRRFPVLGCKHVINKLMQDTWCAVAELQHVYA 110
                7************************************************776659************************************999998866 PP

     DUF260 100 e 100
                +
  678397298 111 Q 111
                5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.68710112IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-3411107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTVNKGGAAP ACAACKYQRR KCTPDCTLAP YFPASDSRTF QNVHRLFGVS KVTKTLDSLT  60
REDHKHDAIK SMIYEAEIRR RFPVLGCKHV INKLMQDTWC AVAELQHVYA QLEYYKNNSR  120
GVGDDGMIHT QMITQLSSDV MGMNIDHSND PRMMRMMPTA SENDNFKAYD AAQLDHEANQ  180
ILLDADACLS STNLEEEGAV GSQTAQAELK TAAAAFSLTT VK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2571327126LOB family transfactor Ramosa2.1
5ly0_B4e-2571327126LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678397298
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022886739.12e-44LOB domain-containing protein 1-like
SwissprotQ9STS63e-33LBD27_ARATH; LOB domain-containing protein 27
STRINGXP_009612871.13e-38(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.15e-28LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]