PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678398020

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HD-ZIP

Protein Properties

Length: 186aa MW: 20825.6 Da PI: 10.0353

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678398020	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.5e-17	17	70	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++t++q+++Le+ F +++ e++ +LA++lg++ rq+ +W+qN+Ra++k+ 678398020 17 KKRLTQDQVRVLEASFIAGKKLEPERKFQLARELGVPPRQIAIWYQNKRARWKN 70 5679************************************************95 PP
2	HD-ZIP_I/II	108.3	5.5e-35	16	107	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++qv++LE sF + +kLeperK +lareLg+ prq+a+W+qn+RAR+k++ lE dy aL+ +++a +++++Lek+ve+Lr+elk+ 678398020 16 QKKRLTQDQVRVLEASFIAGKKLEPERKFQLARELGVPPRQIAIWYQNKRARWKNQSLELDYGALQLRLEAALADKRQLEKQVESLRAELKR 107 69***************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.24	11	71	IPR001356	Homeobox domain
SMART	SM00389	3.1E-14	13	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.21E-17	16	79	IPR009057	Homeodomain-like
CDD	cd00086	1.88E-13	17	72	No hit	No description
Pfam	PF00046	5.4E-15	17	70	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.7E-18	18	77	IPR009057	Homeodomain-like
PRINTS	PR00031	8.8E-5	42	51	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	46	69	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.8E-5	51	67	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSLQHSQKSH HALKLQKKRL TQDQVRVLEA SFIAGKKLEP ERKFQLAREL GVPPRQIAIW 60 YQNKRARWKN QSLELDYGAL QLRLEAALAD KRQLEKQVES LRAELKRATQ DTTAFRSQFQ 120 NPVFGSSLSS GGDETTTTVC SSLNDDVGYS GNWGNGDSLK LEELYACLML GIPKGSNHAP 180 FPGGVK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678398020

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082709.1	7e-72	homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A2G9HDX0	1e-71	A0A2G9HDX0_9LAMI; Uncharacterized protein
STRING	Migut.M00776.1.p	4e-63	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	5e-38	homeobox protein 52