PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678398638
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 224aa    MW: 24839.2 Da    PI: 7.3375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678398638genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-184593355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  678398638 45 FLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAQEAALAYDKAALSIKG 93
               56******.**********933...5***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.0E-2944107IPR001471AP2/ERF domain
PROSITE profilePS5103220.75844101IPR001471AP2/ERF domain
CDDcd000182.23E-2744100No hitNo description
Gene3DG3DSA:3.30.730.101.8E-2745100IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2045101IPR016177DNA-binding domain
PRINTSPR003676.4E-84556IPR001471AP2/ERF domain
PfamPF008472.4E-114793IPR001471AP2/ERF domain
PRINTSPR003676.4E-86783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MPSSKPLAPL ELGHLEKGAC TLLQSAAAVG FRGKKKKKLP DPGRFLGVRR RPWGRYAAEI  60
RDPNTKERHW LGTFDTAQEA ALAYDKAALS IKGLQATTNF IYTNANPEDE EDKGLFNDIL  120
KPEPNSGYLD CIVPSNYLYP PHARRLNTPD RKLASCVGEL DDKETRIFST PLEEQRVQLG  180
QYCELSAVVY NHGVVGESKI EGCDQMNGKV FPCGGDDAWK NCVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-19411001171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678398638
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438827.18e-38PREDICTED: ethylene-responsive transcription factor ERF086
RefseqXP_021904878.18e-38ethylene-responsive transcription factor ERF086
STRINGevm.model.supercontig_16.1483e-37(Carica papaya)
STRINGXP_008438827.13e-37(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93072125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-38ERF family protein