PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678398661
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 443aa    MW: 47474.2 Da    PI: 6.3361
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678398661genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.8e-125176227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               +++ C ++++tG+C yG+rC+F+H+p
  678398661 51 DEPDCLYYLKTGFCGYGNRCRFNHPP 76
               6899********************97 PP
2zf-CCCH361.1e-11102127227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++ +tG+Ck+G +CkF+H++
  678398661 102 GEKECSYYIKTGICKFGVTCKFHHPQ 127
                6789********************97 PP
3zf-CCCH37.34.5e-12270295126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +++++C++++++G Ck+G++CkF+H+
  678398661 270 PGQPECQYYLKNGDCKFGASCKFHHP 295
                5789*********************8 PP
4zf-CCCH314.5e-10317341327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C++++++G C yG++C+F H++
  678398661 317 ARICSHYSQNGVCEYGPSCRFDHPM 341
                589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7744977IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-54976IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-95176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-65377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-55575IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.934101128IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014102127IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8102127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5103128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-4106126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.807269297IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6269296IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9271295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5273296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4275295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6311340IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-6314341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399314342IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7317341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5318339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MERYSETKAM EGVPLDPVEE WVAPVGETGL EEPLWQLGLG GYSQAYPERP DEPDCLYYLK  60
TGFCGYGNRC RFNHPPDRSM VMGDFRSGGM YPERTGQPVC QGEKECSYYI KTGICKFGVT  120
CKFHHPQPSG MHFPAPEQGP GPIGTPTAFA PPTIFHAVQG PSVQTSQQYG VIQGNWPITR  180
PTMLQGPYVP GNYGPLLFSS GIIPVPWTAY PGAPLSPGTS PGTQPAVGAD PIYSIAHLSP  240
AATAYSGPYI SIATGASSSS QKEVAFPERP GQPECQYYLK NGDCKFGASC KFHHPSEWNS  300
SRNFMLSPMG LPLRPGARIC SHYSQNGVCE YGPSCRFDHP MRTPGYSSSA SSLTDMPVAP  360
YTIGSTSLTL APSTFPSDRR PSLLADPFPP QMSSMSSASA SVGSIFSKSG PASQMSIQNS  420
DQTNIASDPG ISLSQGDDVK TSN
Cis-element ? help Back to Top
SourceLink
PlantRegMap678398661
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858954.11e-177PREDICTED: zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A2G9GS851e-172A0A2G9GS85_9LAMI; CCCH-type Zn-finger protein
TrEMBLA0A4D8Z7M81e-172A0A4D8Z7M8_SALSN; Uncharacterized protein
STRINGMigut.G00186.1.p1e-177(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-109C3H family protein