PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678398858
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 167aa    MW: 18449.7 Da    PI: 7.4183
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678398858genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-054668123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C++ F ++  L  H++ H
  678398858 46 FECQHCNRKFANSQALGGHQNAH 68
               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.9E-54372IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.35E-74373No hitNo description
PROSITE profilePS5015712.1754673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MEEEVEEPSP VRGAHELHHS SSSSVVKLFG FAVTNCEKLP IETKKFECQH CNRKFANSQA  60
LGGHQNAHKK ERQRAKRAHF MQDHWRLASA INADRAAGSA FGARLPLQTD HAYVYAPQVL  120
SGMPLMHPAG VMARSQRQAI DYGGRSEPHV SGGMEDVSEA VDVDLHL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678398858
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100835.12e-45zinc finger protein 6-like
TrEMBLA0A2G9HNY13e-40A0A2G9HNY1_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105631724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.11e-12zinc finger protein 7