PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678399052
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 415aa    MW: 45701.6 Da    PI: 8.5139
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678399052genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.21e-113964227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               +++ C+++ +tG C+yG++C+F+H+p
  678399052 39 GEPDCSYYIQTGMCRYGATCRFNHPP 64
               6899********************97 PP
2zf-CCCH36.39.1e-1285109327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C+++ +tGtCk+G++CkF+H++
  678399052  85 QPECQYYIKTGTCKFGATCKFHHPR 109
                799********************96 PP
3zf-CCCH36.67.4e-12131155327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C +++r GtCk+G++CkF+H++
  678399052 131 EKECAYYMRHGTCKFGSTCKFNHPQ 155
                679********************97 PP
4zf-CCCH38.71.6e-12277303127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+f+++tG Ck+G+ CkF+H++
  678399052 277 PGQPECQFYMKTGDCKFGAVCKFHHPR 303
                5789*********************96 PP
5zf-CCCH37.93e-12323349127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++lC f++r+G+Ck+G++CkF H++
  678399052 323 PGQPLCVFYSRYGICKFGPSCKFDHPM 349
                589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4933765IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-63764IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-73964IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-64265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-54363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6982110IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-582109IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-885109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-686111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-488109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422128156IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4128155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6129156IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9131155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4134154IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418276304IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5280305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4282303IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7322349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563322350IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9324349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5325349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4327347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGSQILIKST KTISSDAPWE VDSRSTAQTS FGHYPIREGE PDCSYYIQTG MCRYGATCRF  60
NHPPDRKLAI AMAQMNGDFP ERIGQPECQY YIKTGTCKFG ATCKFHHPRD KAWITERVAL  120
NVFGFPLRPN EKECAYYMRH GTCKFGSTCK FNHPQPSNMM VPVRGSTVYP TMHSPTGQVP  180
YSLSRASYLP SPRWQSPSNG PLVMLPGVLS VPTWNTYSGQ LGSVLSSDHQ HPTSGNIQNE  240
GASNQDEGRI PGPHIHAGSV PVGYYGYQGE NVFPERPGQP ECQFYMKTGD CKFGAVCKFH  300
HPRDRTIPAP DCLLSPIGLP LRPGQPLCVF YSRYGICKFG PSCKFDHPMR IVAYDPTTSS  360
TDSSTARNFL ASSLGTVAVS FSPDTLVEAG STSNRRLSLS EARQKPSGDS NIHSA
Cis-element ? help Back to Top
SourceLink
PlantRegMap678399052
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551199.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2G9GDR80.0A0A2G9GDR8_9LAMI; CCCH-type Zn-finger protein
STRINGMigut.F01877.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-157zinc finger protein 1