PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678399881
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 183aa    MW: 21125.3 Da    PI: 8.9005
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678399881genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.6e-203082456
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               + ++++eqle Le+ F+++ +++ +++ +LAk+lg++ rq+ +WFqNrRa++k
  678399881 30 KKRLSNEQLELLENSFQEEVKLDPDRKLKLAKELGMQPRQIAIWFQNRRARWK 82
               5569************************************************9 PP
2HD-ZIP_I/II120.49e-3929120293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kk+rls+eq++lLE+sF+ee kL+p+rK +la+eLg+qprq+a+WFqnrRAR+k+kqlE+ y+aLk++yda+ +++++L++ev +Lr+ lke
    678399881  29 KKKRLSNEQLELLENSFQEEVKLDPDRKLKLAKELGMQPRQIAIWFQNRRARWKAKQLERLYDALKQEYDAVLRDKRKLHQEVLALRAILKE 120
                  9**************************************************************************************88875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-192186IPR009057Homeodomain-like
PROSITE profilePS5007116.7792484IPR001356Homeobox domain
SMARTSM003891.6E-182788IPR001356Homeobox domain
PfamPF000463.7E-172982IPR001356Homeobox domain
CDDcd000863.62E-172985No hitNo description
Gene3DG3DSA:1.10.10.602.1E-203191IPR009057Homeodomain-like
PRINTSPR000311.2E-55564IPR000047Helix-turn-helix motif
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PRINTSPR000311.2E-56480IPR000047Helix-turn-helix motif
PfamPF021831.5E-784118IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDQLAAAQQG MLGLDKIGGM NLNYGQDPKK KRLSNEQLEL LENSFQEEVK LDPDRKLKLA  60
KELGMQPRQI AIWFQNRRAR WKAKQLERLY DALKQEYDAV LRDKRKLHQE VLALRAILKE  120
QLVKKTVNTT EKLIAGDQMP LCDAYELNVD GYNHDSSAVM PPPYWQQPPQ LPSGAREVVD  180
AHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17684RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678399881
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101501.17e-65putative homeobox-leucine zipper protein ATHB-51 isoform X1
RefseqXP_020547010.16e-65putative homeobox-leucine zipper protein ATHB-51 isoform X2
SwissprotQ9LZR02e-42ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLS8D9W84e-64S8D9W8_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.J00491.1.p4e-61(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.15e-36homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]