PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678400959
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 221aa    MW: 25070.7 Da    PI: 5.3568
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678400959genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26066.46.6e-212269148
     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48
               +CaaC++lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++kll+ 
  678400959 22 PCAACRILRRRCAEKCVLAPYFPPTDPQKFTIAHRVFGASNIIKLLQV 69
               7********************************************985 PP
2DUF26055.61.5e-1711216647101
     DUF260  47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                 +lpe+er da+ss+vyeA+ar+rdPvyG++g i++lq+q+++l+ +la+++++l
  678400959 112 MELPESERADAVSSIVYEANARIRDPVYGSAGAIFQLQKQVKELQMQLAKAQAQL 166
                5789**********************************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.0721166IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-202270IPR004883Lateral organ boundaries, LOB
PfamPF031956.2E-15112163IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSVSCSPISS SSTDRTPTVV YPCAACRILR RRCAEKCVLA PYFPPTDPQK FTIAHRVFGA  60
SNIIKLLQVV VSYLFFVYST LFCHEKERSC LSDWVKWCAE SEQNGIEKST FMELPESERA  120
DAVSSIVYEA NARIRDPVYG SAGAIFQLQK QVKELQMQLA KAQAQLVNLQ WENDALMARI  180
YKETTSQMIG VNTFDDFYLM NFPYDVGCGF DNLESFSLEL K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-33161675112LOB family transfactor Ramosa2.1
5ly0_B6e-33161675112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678400959
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488170.15e-59LOB domain-containing protein 1-like
SwissprotQ9LQR06e-54LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A067G4031e-57A0A067G403_CITSI; Uncharacterized protein
STRINGXP_006488170.12e-58(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-37LOB domain-containing protein 1