PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678401069
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 209aa    MW: 22137.7 Da    PI: 7.5574
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678401069genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012125147123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C +Cg  F +   L  H+r+H
  678401069 125 HECLICGSEFASGQALGGHMRRH 147
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-86894IPR007087Zinc finger, C2H2
SuperFamilySSF576672.94E-66991No hitNo description
SMARTSM003555.46991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3466996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SuperFamilySSF576672.94E-6120147No hitNo description
PROSITE profilePS501579.058125147IPR007087Zinc finger, C2H2
SMARTSM003550.17125147IPR015880Zinc finger, C2H2-like
PfamPF139129.7E-10125149IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEYLSASDGL VIVKGKRAHR PPASSGSTSS GGEGGFVGSE DEDMAKCLML LAHGAVPAAG  60
MDVVGGGRFE CKTCFRNFPS SQALGGHRTS HKKQRNNVGE TDRNKASEER FVKLNDHLSR  120
ASKSHECLIC GSEFASGQAL GGHMRRHRPP PGTTSKTTSS GLKHEVSSDG KEPEIVLLLD  180
LNLPAQPEED HSSRNPDFSA AAMAAGCCY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678401069
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613500.13e-38PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X46e-30ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A2G9GNU53e-38A0A2G9GNU5_9LAMI; Uncharacterized protein
STRINGXP_009613500.11e-37(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-30C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]