PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678401339
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HB-other
Protein Properties Length: 174aa    MW: 19664.1 Da    PI: 5.3333
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678401339genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.3e-0923611854
               HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
               lFe   ++yps +e+  LA++ gL+ +qV +WF N R +
  678401339 23 LFEHflHPYPSDSEKLVLATRAGLSRSQVANWFINARVR 61
               5665569******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.4E-8169IPR001356Homeobox domain
PROSITE profilePS5007112.131265IPR001356Homeobox domain
CDDcd000869.58E-12566No hitNo description
SuperFamilySSF466895.99E-17671IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-25869IPR009057Homeodomain-like
PfamPF059209.9E-172261IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MRRPWRPQRG LPETAISILR AWLFEHFLHP YPSDSEKLVL ATRAGLSRSQ VANWFINARV  60
RLWKPMIEDI YREEFGDEGG PPESPPKNAE RNQETPCLDN REEGVIPGAV ALMDSKTVLK  120
RSSVSLDLGL QNNQKDSSMT GATPEANHTP AWIRFSEHDD MGCGETELGR PLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-171169563Homeobox protein Meis2
3k2a_B7e-171169563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678401339
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083613.13e-49BEL1-like homeodomain protein 7
RefseqXP_011083614.13e-49BEL1-like homeodomain protein 7
RefseqXP_011083616.13e-49BEL1-like homeodomain protein 7
TrEMBLA0A2Z7AEK52e-46A0A2Z7AEK5_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.C00771.1.p3e-46(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19700.35e-42BEL1-like homeodomain 10