PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678401646

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 229aa MW: 25674.3 Da PI: 7.7132

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678401646	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.4	8.1e-06	154	194	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + RR +iN+++ L++++P + +k + +L +++ Y++sL 678401646 154 QVRRGKINERLKLLKDIVPGC----CKGTGMVVMLDETISYVQSL 194 78******************7....33366788888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.039	144	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-12	146	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-5	150	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-10	154	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.08E-7	156	199	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MNPPLLPSPM DDDSFFLNHF SGAPSYPTSA PCCFPGTGYY LTRKPSLEEE AQELAALFHG 60 ETVCEEKKRK GVVDSSLEVT APPSNSTNGL RREKRGRRED EKHKDVVHVR ARRGQATDSH 120 SLAERVKFQI IQLLLFLYRF SSAHSRCSFL CDDQVRRGKI NERLKLLKDI VPGCCKGTGM 180 VVMLDETISY VQSLRNQIQF LSMQLAAASS PQCLPTCFGL EDHQLPPSE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678401646

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	A4D998	4e-30	BH075_ARATH; Transcription factor bHLH75

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3971	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	2e-32	BR enhanced expression 1

Publications ? help Back to Top
Khan M, et al. Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. Nat Commun, 2014. 5: p. 4687 [PMID:25134617] Eremina M, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991 [PMID:27655893] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776]