PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678402329

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 337aa MW: 36641.8 Da PI: 7.3266

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678402329	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.2	2e-10	181	229	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq 678402329 181 NSHSLAERVRRERISERMKMLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 229 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-17	176	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.44E-12	176	233	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.6E-18	178	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.682	178	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-7	181	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-11	184	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGCEKISYGG LLQQISSVKA RDGSNNLDTL SNGVEPFYIS GWAAAVSSNQ DGEFPSAVVH 60 DNQFANHGFS SVLKNQTISC PSGEGFSDMM PSFVHSDDQN SGFHQILSKN QGPNACEVSK 120 NGAFGGSPSA KGKRKNSEEG ELRDSRPISQ GRQARDGKLI GGKAKENDYV HVRAKRGQAT 180 NSHSLAERVR RERISERMKM LQDLVPGCNK ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA 240 TVNSEMNIDL DLTRMLPNEI FHQRGNDATA LGVHPESSFL QAFQGTTSVA MGGFSGANPP 300 FHLAAPSLWN NELHDIRRTT GFDSNQSVNS LTPNGRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678402329

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074329.1	2e-86	transcription factor bHLH74
Swissprot	Q6NKN9	1e-52	BH074_ARATH; Transcription factor bHLH74
TrEMBL	A3FM28	4e-85	A3FM28_SESIN; Basic helix-loop-helix protein
STRING	Solyc04g077480.2.1	1e-76	(Solanum lycopersicum)
STRING	PGSC0003DMT400012591	1e-76	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5250	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	4e-55	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]