PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678403094
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24921.7 Da    PI: 6.3608
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678403094genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.91.1e-0721481340
               HHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
     SRF-TF 13 fskRrngilKKAeELSvLCdaevaviif 40
               f + ++ +   A ELS+LCd++va+i+ 
  678403094 21 FERKKTALERSARELSILCDVDVAMIVC 48
               66666667788***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.745152IPR002100Transcription factor, MADS-box
SMARTSM004328.0E-4162IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-13274IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-5323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-91150IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-52338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-53859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGRAKLRMEL ICHEKVRRKA FERKKTALER SARELSILCD VDVAMIVCDP FGGSNQPSVW  60
PPEPEVVERL IESCNSRKDG VCGNKVYGLS DFFKDQTGKM EEETHSVCQK RIDSMPREEL  120
KHLFEFLNSR IYAAIERIEM SKASGASSPL AGGLMHFAVQ ESRDFYPEWW NMEPSEMVQL  180
QPPILQHQPL PTINASNRNI DLMFENAVFI SGMKMVQP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678403094
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.13e-10AGAMOUS-like 15