PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678403572

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HD-ZIP

Protein Properties

Length: 166aa MW: 18900.6 Da PI: 8.9925

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678403572	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51	2.5e-16	2	43	15	56
HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 Le++F +++ + ++++e+LA++lgL rqV vWFqNrR +++ 678403572 2 LERYFFEDPSLETHRKERLAQELGLHHRQVAVWFQNRRVRHR 43 9***************************************98 PP
2	HD-ZIP_I/II	85.6	6.7e-28	1	81	13	93
HD-ZIP_I/II 13 lLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +LE+ F e+ Le++rK++la+eLgl+ rqvavWFqnrR R++tk++E+++ +L++ +++ + e+++Le e +Lre+l+e 678403572 1 MLERYFFEDPSLETHRKERLAQELGLHHRQVAVWFQNRRVRHRTKKIEEEFYRLHALHETTVVEKCHLEMEILRLREKLRE 81 69**9********************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.791	1	45	IPR001356	Homeobox domain
SMART	SM00389	2.1E-6	1	49	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.18E-14	1	46	IPR009057	Homeodomain-like
Pfam	PF00046	1.0E-13	2	43	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.8E-15	2	50	IPR009057	Homeodomain-like
CDD	cd00086	1.65E-12	2	46	No hit	No description
PRINTS	PR00031	1.4E-5	16	25	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	20	43	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.4E-5	25	41	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MLERYFFEDP SLETHRKERL AQELGLHHRQ VAVWFQNRRV RHRTKKIEEE FYRLHALHET 60 TVVEKCHLEM EILRLREKLR EAENEIQKLS AGVPSFPTEE ASLHAGFDLR NSRPAAARCP 120 FPAGKVPSFG LGKSRFSETC SSLTSGFPAN PKLGAAVLSV CGFGVN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678403572

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021679570.1	9e-30	homeobox-leucine zipper protein ATHB-40-like
Swissprot	Q9ZU70	1e-28	ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBL	A0A4D9C5W3	6e-29	A0A4D9C5W3_SALSN; Homeobox-leucine zipper protein
TrEMBL	S8C296	2e-29	S8C296_9LAMI; Uncharacterized protein (Fragment)
STRING	Aquca_010_00425.1	2e-28	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	4e-31	homeobox protein 21

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]