PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678403606

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HB-other

Protein Properties

Length: 132aa MW: 15636.6 Da PI: 6.0274

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678403606	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.4	7.7e-11	10	43	23	56
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++e A++lgL rqV WFqNrR +++ 678403606 10 ASLETHRKEMVAQELGLHHRQVADWFQNRRVRHR 43 56889999************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	12.957	1	45	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.36E-9	8	46	IPR009057	Homeodomain-like
Pfam	PF00046	3.6E-8	10	43	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.0E-12	12	50	IPR009057	Homeodomain-like
CDD	cd00086	1.72E-6	16	46	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MLERDVFEDA SLETHRKEMV AQELGLHHRQ VADWFQNRRV RHRTKKLEEE EFFRPHSLRE 60 TTVVEKCHLE MEIPRLREKL REAENEIQKF SVGVPSFPTE EASLHAGFEF DDIFAPGLFS 120 VLPHVANSHY QV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678403606

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9ZU70	4e-20	ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	2e-22	homeobox protein 21

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]