PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678404446

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NF-YB

Protein Properties

Length: 176aa MW: 19363.5 Da PI: 4.6527

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678404446	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	176.9	2e-55	23	118	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqd+flPianvsrimkk+lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa+atlGfe+y++pl+ yl+++r++egek 678404446 23 REQDKFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMATLGFENYMAPLRFYLQRFRDTEGEK 118 89*******************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.3E-51	18	127	IPR009072	Histone-fold
SuperFamily	SSF47113	2.17E-38	25	131	IPR009072	Histone-fold
Pfam	PF00808	1.1E-27	28	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.5E-18	56	74	No hit	No description
PROSITE pattern	PS00685	0	59	75	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.5E-18	75	93	No hit	No description
PRINTS	PR00615	1.5E-18	94	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MLDSDGSGGI HRDTNYHSES SPREQDKFLP IANVSRIMKK ALPANAKISK EAKETVQECV 60 SEFISFITGE ASDKCQREKR KTINGDDLLW AMATLGFENY MAPLRFYLQR FRDTEGEKNA 120 TLSRGDKDSV GGYSAWVGGD AAAGGYETGM GGSFFGDTVS ESDFWSFPWP DMGGPM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-44	21	113	1	93	NF-YB
4awl_B	1e-44	21	113	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-44	21	113	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
5g49_A	1e-44	18	113	2	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678404446

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022852579.1	5e-71	nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	1e-63	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A2G9FX39	6e-71	A0A2G9FX39_9LAMI; CCAAT-binding factor, subunit A (HAP3)
TrEMBL	A0A2G9GYA3	5e-71	A0A2G9GYA3_9LAMI; CCAAT-binding factor, subunit A (HAP3)
TrEMBL	A0A2Z4K5B9	3e-71	A0A2Z4K5B9_TECGR; NF-Y1 protein (Fragment)
STRING	Migut.H01757.1.p	2e-66	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	4e-66	nuclear factor Y, subunit B3

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]