PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678405093
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 658aa    MW: 72618.3 Da    PI: 5.6953
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678405093genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.2e-07275295526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C++f++ G C++Gd C +aHg
  678405093 275 PCSDFRK-GACRRGDMCEYAHG 295
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.3E-1812152IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.51E-1614133IPR020683Ankyrin repeat-containing domain
PfamPF127961.6E-1151124IPR020683Ankyrin repeat-containing domain
SMARTSM002480.165585IPR002110Ankyrin repeat
PROSITE profilePS5029715.88455162IPR020683Ankyrin repeat-containing domain
CDDcd002041.09E-1357133No hitNo description
SMARTSM002489.6E-590122IPR002110Ankyrin repeat
PROSITE profilePS5008813.06390125IPR002110Ankyrin repeat
SMARTSM003566.9E-6270296IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-5275295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.99275297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4275297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4303333IPR000571Zinc finger, CCCH-type
SMARTSM0035630305328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MNTESSKDAY LSLLELAANN DVEGFKKCVD REPSSVDEAE LWYGRQKGSN QMVLQQMTPL  60
MVATTYGSID VVKFVLSFPD VDVNQSCGVD QSTALHYAAS SGTANAVEIV KLLIEAGADP  120
SLSDSNGCCP YDVIVVSPKS PSLKSSLQML LVRDGSFEDT DLTVLIDTSK SNSDSPPPSP  180
CQRIESPDST TFSKGMKLDD VSVPLTREKK EYPIDPFMPD IKNSIYSSDE FRMFSFKVRP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH YSCVPCSDFR KGACRRGDMC EYAHGVFECW  300
LHPAQYRTRI CKDGTACSRR VCFFAHTQEE LRPLYMSSGS GVHSPRSSSS AVNGMDFAAA  360
MVLPGSPSSV TMMSPSPFTP PISPSSKGML NSSWPSQQQN VPTLSLSGGN FQMSRLHSSL  420
NARDIDVQQQ HLMNEMAFSM HSKMLSSSNL DDVFSESPCP RYPDQALSSS VMSPTHKSAV  480
LNQFQQHQQG MLSPIKTAFS PRNMDHSQLQ TPFGVASSSR NSLVSGDPIS PMSARLSLLA  540
HQDKKHQQFR SLSSRDLVSQ ASSAASPLED PNWSKWGQPL WTSTMADDSA GLRRSSSFEL  600
VNNGDEPDLS WVHSLVKESS QERSAGVDHE TADSMEQVDQ SVLDAWLEQM RLDQLMAQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678405093
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078886.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_020549443.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2G9HGR00.0A0A2G9HGR0_9LAMI; CCCH-type Zn-finger protein
STRINGXP_006421436.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]