PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678405132

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C3H

Protein Properties

Length: 399aa MW: 43577 Da PI: 7.6411

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678405132	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.9	1.3e-06	41	53	13	25
S--TTTTT-SS-S CS zf-CCCH 13 GtCkyGdrCkFaH 25 C+yGdrCkF H 678405132 41 RSCQYGDRCKFLH 53 58*********** PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MRSSQIPQRI RPSTFVSGEP KQQQLNSAHA SCSWCCSPVM RSCQYGDRCK FLHAAPQQSK 60 PNNPFGFGMQ NGSSFQGSNN QQQTPNPFGF GVQNNNQSRG GTDYASETTN FKPFENKWIR 120 PASLSNNTSS TTKQYGNQPQ VAEHKCNDPE LCKRVIMDDL KNEKPQWILS CYGHCRYGPC 180 DTTGDISCEE LRAVAYDDAK TGRSLQYIIE RERSLVNSKL SEFKSLEQRT HTVSSFGGSF 240 PTLSSSSSTP TLGFNQFGQS LNTGPPPVYT FGQPIQSSNN QGQPMQFSNN QASHGAFGSS 300 QFPQTPVQTS FTFGPPSSGN AEATAFAGAF STFGSPSTLG NGSGMQNGFT PNMPSQPSIN 360 LQLNNITSGL DKNVDEGIWT KMWKAGEVPE EAPPDIYIH

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MRSSQIPQRI RPSTFVSGEP KQQQLNSAHA SCSWCCSPVM RSCQYGDRCK FLHAAPQQSK  60
PNNPFGFGMQ NGSSFQGSNN QQQTPNPFGF GVQNNNQSRG GTDYASETTN FKPFENKWIR  120
PASLSNNTSS TTKQYGNQPQ VAEHKCNDPE LCKRVIMDDL KNEKPQWILS CYGHCRYGPC  180
DTTGDISCEE LRAVAYDDAK TGRSLQYIIE RERSLVNSKL SEFKSLEQRT HTVSSFGGSF  240
PTLSSSSSTP TLGFNQFGQS LNTGPPPVYT FGQPIQSSNN QGQPMQFSNN QASHGAFGSS  300
QFPQTPVQTS FTFGPPSSGN AEATAFAGAF STFGSPSTLG NGSGMQNGFT PNMPSQPSIN  360
LQLNNITSGL DKNVDEGIWT KMWKAGEVPE EAPPDIYIH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678405132

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078164.1	1e-111	zinc finger CCCH domain-containing protein 46 isoform X1
Refseq	XP_011078165.1	1e-111	zinc finger CCCH domain-containing protein 46 isoform X2
Refseq	XP_020549342.1	1e-111	zinc finger CCCH domain-containing protein 46 isoform X1
TrEMBL	A0A2G3BP73	1e-86	A0A2G3BP73_CAPCH; Uncharacterized protein
STRING	Solyc12g009390.1.1	2e-80	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9439	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.2	7e-58	C3H family protein