PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678405712

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Dof

Protein Properties

Length: 196aa MW: 21624.1 Da PI: 9.2116

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678405712	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.1	1e-34	29	86	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +al+cprC stntkfCyynny+ sqPr+fCkaC+r+WtkGG lrn+PvGg rk+k+ 678405712 29 PEALNCPRCGSTNTKFCYYNNYNRSQPRHFCKACKRHWTKGGVLRNIPVGGV-RKSKHP 86 6789*********************************************975.666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-22	23	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-30	31	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.431	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MQNNLMGLRT KQLSGDQGAR FAAGERPEPE ALNCPRCGST NTKFCYYNNY NRSQPRHFCK 60 ACKRHWTKGG VLRNIPVGGV RKSKHPKSSI PAEGRWKNIH GDSGKVGSKS LSPQVSENHY 120 KNRGSGSNII QEKASLMSPL ELEASSLGSL DIPTTTSGSF WPETNSGIAD YWNFDDIDLS 180 TYSVLDNAAE FNNLQP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678405712

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10036172	2e-33	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-30	DOF zinc finger protein 1