PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678407225

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SBP

Protein Properties

Length: 969aa MW: 107748 Da PI: 6.7966

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678407225	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.4	7.7e-42	147	224	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh+l+efD++krsCrrrLa+hn+rrrk+++ 678407225 147 ICQVEGCKADLSNAKDYHRRHKVCEVHSKASAALVGNVMQRFCQQCSRFHALEEFDDGKRSCRRRLAGHNKRRRKAHP 224 5**************************************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.6E-33	143	209	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.402	145	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.4E-38	147	226	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.5E-31	148	221	IPR004333	Transcription factor, SBP-box
CDD	cd00204	7.92E-5	721	860	No hit	No description
SuperFamily	SSF48403	1.71E-7	735	860	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.3E-5	737	863	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 969 aa Download sequence Send to blast
MELGGKSHHF YGSVVSEPLN GLGKRSMEWD LNEWRWDGDF LRAAPLNAVP SDCRSRQFFP 60 VCPSLPVKDG FVNFLSPLPH GPAPEAGMDK RDSEKRRRYV EMNEEQNGSL NLNLGGQVCP 120 AIDRDADKWE KSGKKSKLSG VQPSRTICQV EGCKADLSNA KDYHRRHKVC EVHSKASAAL 180 VGNVMQRFCQ QCSRFHALEE FDDGKRSCRR RLAGHNKRRR KAHPENVVGS SAVSDEQGAK 240 YLLTSLLRIL SNTQSSSSGQ TNDQDLLSHL LRNLATVAGA TNPTSPSELL PVSQNSHNAG 300 TVVKDKNPDG RGLTLPSDSL MQKSAPNGFI QVEPACETSP PCSSDASAKV GRIKMSNIDL 360 NSVYDDTEEC SEDFLDNVPR DNPENVSPCL SPWSFKESQR CSPFQNSGNS GSSQSQTPST 420 SSGESRTHTD RIVFKLFNKN PDDLPLDLRK QIFDWLSNSP TDIESYIRPG CIVLTIYACM 480 DKSNWDELHC NLHFNLRKLL NASCDPFWRS EWIYARVQNH ASFAYNGHVV LDKPIPLNAH 540 QSCRISTITP IAVSFSESAH FVIKGYNLTG PSSRLHCALE GRYLLQEKCA DIVGDDYLMS 600 QEEFQCFGFS CNIPDAVGRG FIEVEDYCLN SSFFPFIVAE QDVCAEVRDL ETVIEVTDNA 660 SSDKLEARNQ ALNFVHELGW LLHKSHLVSR LGKLSQDLAL FPFWRYKYLI EFSIDHEWPA 720 VVRKLLDVLL DGTVVAEGNT SVLSALFDVG LLHRAVRKSS VPMVKFLLTY QPTRISIKLE 780 NAHERALTSS FMFKPDASGP GGVTPLHLAA GLDDSDAVID SLTEDPESVG IEAWRNTPDS 840 AGMTPHDYAY LRGHFSYIHL VERKLNKKHG VVALDIPDGT AKQTVEHGGR IAALETEKST 900 RKQLPMMSCK RCRETGAYGS PVAIYRPAML SMLAIAAVCV CAALLFKSSP EVVFSFRPFR 960 WEQLKYGAE

Sequence ? help Back to Top

Protein Sequence Length: 969 aa Download sequence Send to blast

MELGGKSHHF YGSVVSEPLN GLGKRSMEWD LNEWRWDGDF LRAAPLNAVP SDCRSRQFFP  60
VCPSLPVKDG FVNFLSPLPH GPAPEAGMDK RDSEKRRRYV EMNEEQNGSL NLNLGGQVCP  120
AIDRDADKWE KSGKKSKLSG VQPSRTICQV EGCKADLSNA KDYHRRHKVC EVHSKASAAL  180
VGNVMQRFCQ QCSRFHALEE FDDGKRSCRR RLAGHNKRRR KAHPENVVGS SAVSDEQGAK  240
YLLTSLLRIL SNTQSSSSGQ TNDQDLLSHL LRNLATVAGA TNPTSPSELL PVSQNSHNAG  300
TVVKDKNPDG RGLTLPSDSL MQKSAPNGFI QVEPACETSP PCSSDASAKV GRIKMSNIDL  360
NSVYDDTEEC SEDFLDNVPR DNPENVSPCL SPWSFKESQR CSPFQNSGNS GSSQSQTPST  420
SSGESRTHTD RIVFKLFNKN PDDLPLDLRK QIFDWLSNSP TDIESYIRPG CIVLTIYACM  480
DKSNWDELHC NLHFNLRKLL NASCDPFWRS EWIYARVQNH ASFAYNGHVV LDKPIPLNAH  540
QSCRISTITP IAVSFSESAH FVIKGYNLTG PSSRLHCALE GRYLLQEKCA DIVGDDYLMS  600
QEEFQCFGFS CNIPDAVGRG FIEVEDYCLN SSFFPFIVAE QDVCAEVRDL ETVIEVTDNA  660
SSDKLEARNQ ALNFVHELGW LLHKSHLVSR LGKLSQDLAL FPFWRYKYLI EFSIDHEWPA  720
VVRKLLDVLL DGTVVAEGNT SVLSALFDVG LLHRAVRKSS VPMVKFLLTY QPTRISIKLE  780
NAHERALTSS FMFKPDASGP GGVTPLHLAA GLDDSDAVID SLTEDPESVG IEAWRNTPDS  840
AGMTPHDYAY LRGHFSYIHL VERKLNKKHG VVALDIPDGT AKQTVEHGGR IAALETEKST  900
RKQLPMMSCK RCRETGAYGS PVAIYRPAML SMLAIAAVCV CAALLFKSSP EVVFSFRPFR  960
WEQLKYGAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	147	221	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	98	EKRRRY

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00603	PBM	Transfer from AT2G47070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678407225

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020547976.1	0.0	LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 1
TrEMBL	A0A2G9I0L1	0.0	A0A2G9I0L1_9LAMI; Uncharacterized protein
STRING	POPTR_0008s09810.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1