PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678407487
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 177aa    MW: 19656.4 Da    PI: 10.1438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678407487genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.79e-0895135954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r RR+ri +++  L++l+P        +++ a++L +A++Y+k L
  678407487  95 ARHRRERISHRIRILQRLVPGG-----SRMDTASMLDEAIHYVKFL 135
                699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.6486135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-1491145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1291144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-1392141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-1092140No hitNo description
PfamPF000103.6E-596135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDVDLFTSPP SDEHQMEMML LLMQMDNVPQ LSHLYRPSPP SSSSGPQETA AQFSAMREMI  60
FRIAAMQPVD IDPDSLRPPK RRNVKISTDP QSVAARHRRE RISHRIRILQ RLVPGGSRMD  120
TASMLDEAIH YVKFLKNQVQ SLERVAAAGT TPMGNSPSHG AWRGSGTGDG AGEPLRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678407487
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019414815.16e-54PREDICTED: transcription factor HEC2-like
SwissprotQ9SND41e-43HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2I0B7K22e-55A0A2I0B7K2_9ASPA; Transcription factor HEC1
STRINGAquca_010_00306.11e-53(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-41bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]