PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678409370

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 219aa MW: 23256.3 Da PI: 9.7123

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678409370	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.7e-12	146	193	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka iL + ++YI+sLq 678409370 146 SHSLAERARREKISERMKILQDLVPGC----NKIIGKALILDEIINYIQSLQ 193 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.22E-10	140	197	No hit	No description
SuperFamily	SSF47459	9.03E-18	140	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.031	142	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-18	142	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	146	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-10	148	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDPPPLVNGA AAPSPSSHTL AALLSSPMRT GGGLALRIGG AGSGGGGDCS LEESTVTDHS 60 GGAGKRRREA WSSFDDGLVS TSSANQDLAK LNAKRAKASK MGEGYCGSRA EGEESSGAKP 120 FEGKNKPEPP KDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP GCNKIIGKAL 180 ILDEIINYIQ SLQRQVEFLS MKLEAITARL NRTITGPPY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678409370

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071749.1	2e-78	transcription factor bHLH79-like isoform X2
Swissprot	Q9LV17	4e-61	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A0H3YBS3	9e-90	A0A0H3YBS3_SALMI; Basic helix-loop-helix transcription factor
STRING	XP_006476705.1	2e-76	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-60	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]