PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678409491

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HB-other

Protein Properties

Length: 447aa MW: 50619.9 Da PI: 9.337

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678409491	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.4	2.1e-17	15	70	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR t+ q ++Le++F++++yp+++ + + A+ +gLte+qV+ WF+ rR k+kk 678409491 15 RKRMVKTAAQRQALEKFFNEHKYPTEALKMQFAETVGLTEKQVSGWFCHRRLKDKK 70 89****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-19	7	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.85E-17	8	71	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	11	71	IPR001356	Homeobox domain
SMART	SM00389	4.2E-17	13	75	IPR001356	Homeobox domain
Pfam	PF00046	7.1E-15	15	70	IPR001356	Homeobox domain
CDD	cd00086	2.03E-15	15	72	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MHSEDDKGFV EKKNRKRMVK TAAQRQALEK FFNEHKYPTE ALKMQFAETV GLTEKQVSGW 60 FCHRRLKDKK SMGGDNHHTG KQERSSGVIQ DRGSGHKQDS CGSTKQGDDR NFDNKEVESG 120 RVMSKDYSAV DLAHEHSTHY AGKYDSEDDT NSGSSSPFRD MPNHRDRGPF SNENLMHLMP 180 KPEHERRLKA RSGPSGYLKL KGRLENPAIS AVKRRLGKRY RDEGPPLSVE FDPPPPGAFE 240 FPMQNLPRER YYSGEVFPPT PSDVSRAPQN LKFEEERGGY EPSVGSFNNH VDGPSFKTRN 300 EFSSPNGYTH PTFPQKTPPG NSGVYYPYRG SSVEQREGST RNILQTRPWP DHLPSGGKVR 360 ENMKNEYSGS NPVREANPLN DCVSRPLANG SSQQVFKPPR RINEEHPVRQ PTQDTFPRMY 420 SIPRYGKVLP PDLSNDVESA DTSSSYD

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MHSEDDKGFV EKKNRKRMVK TAAQRQALEK FFNEHKYPTE ALKMQFAETV GLTEKQVSGW  60
FCHRRLKDKK SMGGDNHHTG KQERSSGVIQ DRGSGHKQDS CGSTKQGDDR NFDNKEVESG  120
RVMSKDYSAV DLAHEHSTHY AGKYDSEDDT NSGSSSPFRD MPNHRDRGPF SNENLMHLMP  180
KPEHERRLKA RSGPSGYLKL KGRLENPAIS AVKRRLGKRY RDEGPPLSVE FDPPPPGAFE  240
FPMQNLPRER YYSGEVFPPT PSDVSRAPQN LKFEEERGGY EPSVGSFNNH VDGPSFKTRN  300
EFSSPNGYTH PTFPQKTPPG NSGVYYPYRG SSVEQREGST RNILQTRPWP DHLPSGGKVR  360
ENMKNEYSGS NPVREANPLN DCVSRPLANG SSQQVFKPPR RINEEHPVRQ PTQDTFPRMY  420
SIPRYGKVLP PDLSNDVESA DTSSSYD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678409491

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080403.1	1e-117	uncharacterized protein LOC105163662 isoform X3
TrEMBL	A0A4D9AV99	1e-125	A0A4D9AV99_SALSN; Uncharacterized protein
STRING	Migut.N02368.1.p	1e-111	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	6e-59	HB-other family protein