PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678409789
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 229aa    MW: 25206.3 Da    PI: 9.0363
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678409789genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000332952123
               EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
               ++C  C++ Fs+   L  H+++ H
  678409789 29 HVCRECSRKFSSGKALGGHMSRaH 52
               79*******************988 PP
2zf-C2H213.70.000197899223
               EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
               +C  C ++F++  +L+ H+r+H
  678409789 78 VCATCLRVFRSDKSLHGHMRSH 99
               6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.3E-82852IPR007087Zinc finger, C2H2
SMARTSM003550.422952IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.1412957IPR007087Zinc finger, C2H2
PROSITE patternPS0002803152IPR007087Zinc finger, C2H2
PROSITE profilePS501578.91277107IPR007087Zinc finger, C2H2
SMARTSM003553.27799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
PfamPF139121.7E-579100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MRKTRNRDAG DAGNVKKRKV ESDDEPVAHV CRECSRKFSS GKALGGHMSR AHVQVNEDRQ  60
KRRKPRNSRK KGGSGEAVCA TCLRVFRSDK SLHGHMRSHP RHTRKDMDPK LTLALEATPD  120
PELERMTIGL EIKGFSSVDI SAAILLVEMR IGFYSTDTVP RNQGSDSIAA LSTGDSHSVG  180
GVNFATETPY SHPEEIPRDV RADPRSMKFS IDLNVQAPPA DGSDDPCSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15762DRQKRR
25870RQKRRKPRNSRKK
36070KRRKPRNSRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678409789
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.17e-12C2H2 family protein